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Forum: RNA Sequencing 08-06-2014, 07:04 AM
Replies: 22
Views: 12,364
Posted By essepf
Hi dpryan I can send you 2 files output from...

Hi dpryan

I can send you 2 files output from htseq-count by mail, can be?
can provide me your email?
Forum: RNA Sequencing 08-06-2014, 07:00 AM
Replies: 22
Views: 12,364
Posted By essepf
Hi pm2012 Thanks for your reply. The...

Hi pm2012

Thanks for your reply.

The output files I have are on this format.

gene reads_WR1
610005C13Rik 2473
0610007N19Rik 15
0610007P14Rik 1291
Forum: RNA Sequencing 08-05-2014, 12:15 PM
Replies: 22
Views: 12,364
Posted By essepf
Hi this is my script: library("DESeq2")...

Hi

this is my script:

library("DESeq2")
sampleFiles <- list.files(path="/Users/me/Desktop/RNASeq/htseq-count_Results_6Samples/htseq_Adp/")
sampleCondition=factor(c(rep("pr",3), rep("wt",3)))...
Forum: RNA Sequencing 08-05-2014, 10:51 AM
Replies: 22
Views: 12,364
Posted By essepf
DESeq2 --- htseq-count

Hi Michael

Thank you for your suggestion......
Forum: RNA Sequencing 08-05-2014, 08:56 AM
Replies: 22
Views: 12,364
Posted By essepf
Hello I have more ou less the same problem: ...

Hello I have more ou less the same problem:

> ddsHTSeq <- DESeqDataSetFromHTSeqCount(sampleTable = sampleTable, directory = directory, design = des)
Error in Ops.factor(a$V1, l[[1]]$V1) :
...
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