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Forum: RNA Sequencing 08-29-2012, 08:27 PM
Replies: 4
Views: 9,723
Posted By Alex124
Try IGV

Easiest way to understand this output is to load it into IGV, Broad Institute's Integrated Genome Viewer. You can then compare the values with what shows on the screen, try changing them to see what...
Forum: RNA Sequencing 02-28-2012, 06:50 PM
Replies: 4
Views: 9,723
Posted By Alex124
Explanation of junctions.bed

[seqname] [start] [end] [id] [score] [strand] [thickStart] [thickEnd] [r,g,b] [block_count] [block_sizes] [block_locations]
"start" is the start position of the leftmost read that contains the...
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