Forum: Bioinformatics
08-27-2010, 02:47 PM
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Replies: 147
Views: 66,104
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Forum: Bioinformatics
08-25-2010, 09:35 AM
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Replies: 1
Views: 2,007
Samtool Pileup file
Hello All,
Have you seen a pileup file like this?
chr1 862 N G 4 0 3 1 ^$G 8
chr1 863 N C 4 0 3 1 C ...
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Forum: Bioinformatics
08-24-2010, 07:41 PM
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Replies: 15
Views: 8,158
Hi,
You could try SVA in DUKE...
Hi,
You could try SVA in DUKE (http://people.genome.duke.edu/~dg48/sva/index.php).
I think this big guy can satisfy your request if you have a big computer.
Wu
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Forum: Bioinformatics
08-24-2010, 06:24 PM
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Replies: 12
Views: 17,445
Hi ruping,
So that means I can not convert...
Hi ruping,
So that means I can not convert large sam files into bam?[/QUOTE]
I think you can convert sam files as large as possible to bam. I have tried a sam file more than 100G.
Wu
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Forum: Bioinformatics
08-22-2010, 03:06 PM
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Replies: 292
Views: 172,135
Dear All,
Do you know if samtools can...
Dear All,
Do you know if samtools can perform multiple commands (>2) together? Here assuming that I have ten BAM files (result001.bam, result002.bam,......result010.bam) and want to merge them...
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Forum: Bioinformatics
08-22-2010, 12:16 PM
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Replies: 3
Views: 2,716
Thanks for your answer, dawe.
But why did...
Thanks for your answer, dawe.
But why did you say "Never had a whole genome with that coverage "? Most of the sequenced individuals such as YH (PMID:18987735) and AK1 (PMID:19587683) were higher...
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Forum: Bioinformatics
08-21-2010, 07:45 PM
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Replies: 3
Views: 2,716
Transfer a whole genome with .bam format
Dear all,
Do you have experience to transfer a whole genome of short-reads with ~35X sequenced by Illumina GA to .bam format using samtools? I feel very strange when I got more than 500G data. I...
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Forum: Bioinformatics
02-16-2010, 07:22 PM
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Replies: 292
Views: 172,135
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Forum: Bioinformatics
02-13-2010, 10:46 AM
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Replies: 16
Views: 6,169
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Forum: Bioinformatics
11-13-2009, 09:30 AM
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Replies: 236
Views: 670,881
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Forum: Bioinformatics
11-13-2009, 07:10 AM
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Replies: 236
Views: 670,881
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Forum: Literature Watch
11-12-2009, 08:11 AM
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Replies: 2
Views: 4,613
Hi Dione,
After read more carefully on your...
Hi Dione,
After read more carefully on your website about this new technology, I think it will be applied rapidly on various domains. I hope this technology will bring us new chance among human...
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Forum: Literature Watch
11-11-2009, 12:05 PM
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Replies: 2
Views: 4,613
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Forum: Bioinformatics
11-05-2009, 08:32 PM
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Replies: 236
Views: 670,881
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