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Forum: RNA Sequencing 01-19-2018, 07:59 PM
Replies: 0
Views: 1,670
Posted By queueing
absolute microRNA levels

Hi all,
I have a fundamental question that is a bit embarrassingly rudimentry, considering I have been investigating microRNAs for a couple of years now.

I'm working with data from the TCGA and...
Forum: Bioinformatics 06-18-2015, 07:41 PM
Replies: 0
Views: 1,218
Posted By queueing
Normalized human serum miRNA library datasets?

Hi all,

Anyone have any idea where I might find datasets for healthy and cancer
subjects?

-circulating miRNA investigation.
-any cancer
-ok, yes I would settle for non-normalized

Thanks...
Forum: Bioinformatics 05-04-2015, 11:09 AM
Replies: 1
Views: 1,193
Posted By queueing
finding flanking annotated features

Hi all,
I've blasted (NCBI, nblast) a few hundred short sequences from an RNA seq library using Biopython and received a large xml file as ouptut.
What I need to to next is find the flanking...
Forum: Bioinformatics 04-29-2015, 06:08 AM
Replies: 1
Views: 1,559
Posted By queueing
automated remote blasting issue

Hi everyone,

I'm trying to remotely blast about 70 200-nt sequences using Biopython.
I've been trying for hours to figure out why the following Python script won't work.
I can get it to work...
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