Forum: Literature Watch
07-01-2011, 05:21 AM
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Replies: 2
Views: 2,973
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Forum: General
07-01-2011, 05:14 AM
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Replies: 3
Views: 3,655
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Forum: General
07-01-2011, 01:21 AM
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Replies: 3
Views: 3,655
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Forum: General
06-19-2011, 09:53 PM
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Replies: 39
Views: 26,098
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Forum: General
06-18-2011, 03:58 AM
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Replies: 39
Views: 26,098
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Forum: General
06-17-2011, 04:42 AM
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Replies: 39
Views: 26,098
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Forum: Bioinformatics
12-15-2010, 11:53 AM
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Replies: 3
Views: 1,839
My scripting skills are the problem... I know...
My scripting skills are the problem... I know some basic shell stuff like grep, sed, awk etc. I come more from the wetlab. Using pre-existing tools and some mild reformatting is ok for me. But I am...
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Forum: Bioinformatics
12-15-2010, 04:04 AM
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Replies: 3
Views: 1,839
Splitting fasta AND quality on masked sequence
Hello,
does anybody have a script or any program that allows me to split fasta sequences and the according quality file on masked bases such as "N"? Everything I find works perfectly on fasta files...
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Forum: De novo discovery
08-04-2010, 10:03 PM
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Replies: 58
Views: 61,839
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Forum: Bioinformatics
10-27-2009, 03:53 AM
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Replies: 13
Views: 5,010
Hi. I thought I already did send you a private...
Hi. I thought I already did send you a private message montera. CAP3 is also included in the TGICL package (http://compbio.dfci.harvard.edu/tgi/software/). Just download TGICL and you will have CAP3....
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Forum: Bioinformatics
10-27-2009, 03:50 AM
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Replies: 13
Views: 5,010
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Forum: Bioinformatics
10-27-2009, 12:35 AM
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Replies: 13
Views: 5,010
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Forum: Bioinformatics
10-26-2009, 12:13 PM
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Replies: 13
Views: 5,010
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Forum: Bioinformatics
01-21-2009, 12:44 PM
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Replies: 13
Views: 5,010
CAP3 output *.ace in EagleView?
Hello,
I am a molecular biologist. We have done some EST sequencing and I used TGICL / CAP3 for sequence assembly. Everything works fine and it constructs all the contigs etc. Now I wanted to check...
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