Forum: Bioinformatics
10-30-2011, 07:04 PM
|
|
Replies: 1
Views: 3,629
Computational Biology / Bioinformatics companies
Like the "Software packages for NGS data analysis" thread I guess a list of companies who offer exclusive data analysis products/services will be of great help too.
In India
1. Geschickten...
|
|
Forum: Introductions
10-30-2011, 06:51 AM
|
|
Replies: 0
Views: 2,888
iOmics - Cloud based NGS data analysis platform
Hello All,
About Geschickten
Geschickten Biosciences a Life Sciences and Healthcare technology company focusing on integrating Genomic, Genetic, Medical and Clinical information to faster and...
|
|
Forum: Bioinformatics
07-25-2010, 11:17 PM
|
|
Replies: 6
Views: 4,940
|
|
Forum: Bioinformatics
07-25-2010, 11:06 PM
|
|
Replies: 12
Views: 4,706
|
|
Forum: Bioinformatics
07-25-2010, 11:02 PM
|
|
Replies: 10
Views: 3,665
Hi All,
We have a MAQ that works with 125bp...
Hi All,
We have a MAQ that works with 125bp Illumina read and we also a version that works with 454 data. Its not in open domain. If anybody is interested then please send me a request at...
|
|
Forum: Bioinformatics
07-22-2010, 06:24 AM
|
|
Replies: 17
Views: 4,389
|
|
Forum: Bioinformatics
07-22-2010, 02:36 AM
|
|
Replies: 17
Views: 4,389
|
|
Forum: Bioinformatics
01-12-2010, 06:20 PM
|
|
Replies: 17
Views: 4,389
|
|
Forum: Bioinformatics
01-12-2010, 05:55 PM
|
|
Replies: 17
Views: 4,389
nilshomer & Jonathan
I know its a pain to...
nilshomer & Jonathan
I know its a pain to pen a few details before you download any softwareand I am sorry for that; well Jonathan you are partially right; I mean what we have is a wrapper and we...
|
|
Forum: Bioinformatics
01-11-2010, 11:09 PM
|
|
Replies: 1
Views: 2,899
List of Assembly and Analysis tools
Hi All,
We are determined to parallelize and Cloud enable a lot of Assembly and Analysis software. In this regard I request all the members to list the most wanted assembly and analysis software...
|
|
Forum: Bioinformatics
01-11-2010, 10:36 PM
|
|
Replies: 11
Views: 6,393
|
|
Forum: Bioinformatics
01-11-2010, 10:32 PM
|
|
Replies: 17
Views: 4,389
I am pleased to announce that Cloud-MAQ is...
I am pleased to announce that Cloud-MAQ is available for download. For enthusiasts please go to http://www.geschickten.com/PaCGeE.html.
Please remember that your suggestions and feedback are...
|
|
Forum: Bioinformatics
12-22-2009, 07:13 AM
|
|
Replies: 6
Views: 6,282
Hi MicroOmicsMan,
Well you may not need to...
Hi MicroOmicsMan,
Well you may not need to know programming or scripting to use any tools; but NGS data analysis according to me is more computational than biology and hence it always helps if you...
|
|
Forum: Bioinformatics
12-22-2009, 03:52 AM
|
|
Replies: 17
Views: 4,389
|
|
Forum: Bioinformatics
12-16-2009, 09:26 PM
|
|
Replies: 17
Views: 4,389
|
|
Forum: Bioinformatics
12-13-2009, 08:30 PM
|
|
Replies: 17
Views: 4,389
Cloud-MAQ
We have developed an enhanced version of MAQ called Cloud-MAQ. It outperforms MAQ in terms of runtime. For 120 million (33 base, Illumina) sequence reads on a single core, MAQ took 8hrs for reference...
|
|
Forum: Bioinformatics
10-26-2009, 05:58 AM
|
|
Replies: 10
Views: 4,418
Hi jasonbcold,
I guess it's nothing to do...
Hi jasonbcold,
I guess it's nothing to do with H/w; if you see the pthreads part of the BWA code you will understand.. I still have to dive deep into the code but at a high level I can guess the...
|
|
Forum: Bioinformatics
10-22-2009, 08:13 PM
|
|
Replies: 10
Views: 4,418
jasonbcold,
Well this is a common thing I...
jasonbcold,
Well this is a common thing I hear from many people doing analysis work on multi CPU/core machines. Well according me if the software is parallelized/optimized for shared/distributed...
|
|
Forum: Bioinformatics
10-08-2009, 02:48 AM
|
|
Replies: 5
Views: 3,090
Parallel Bioinformatics tools
Can we list all the available ( open source and commercial) parallel (written using MPI / Map Reduce etc) bioinformatics tools. It can include tools that cover both secondary and tertiary analysis...
|
|
Forum: Bioinformatics
10-07-2009, 11:05 AM
|
|
Replies: 27
Views: 12,071
Jnfass,
You say that you have done Velvet...
Jnfass,
You say that you have done Velvet assemblies with > 100M reads (some paired-end) on a 512G machine; we know that Velvet is not a parallel assembler and you say that the Sun box ( I assume...
|
|
Forum: Bioinformatics
10-05-2009, 10:06 AM
|
|
Replies: 27
Views: 12,071
Hi Zigster,
Can you please share the exact...
Hi Zigster,
Can you please share the exact configuration of the machine that you used to for this run. Also what's your take on if somebody allows you to run this in Cloud?? would you go for it?
|
|
Forum: Bioinformatics
10-05-2009, 10:02 AM
|
|
Replies: 27
Views: 12,071
Hi jnfass,
Can you please share some...
Hi jnfass,
Can you please share some information on who's doing the work on parallelizing assemblers? Also kindly point to some good open source parallel assemblers if you know any.. thank you
|
|
Forum: Service Providers
08-25-2009, 01:53 AM
|
|
Replies: 167
Views: 220,123
|
|
Forum: Bioinformatics
08-20-2009, 08:58 AM
|
|
Replies: 2
Views: 1,736
|
|
Forum: Bioinformatics
08-14-2009, 12:37 AM
|
|
Replies: 27
Views: 12,071
|
