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Search: Posts Made By: Rangika
Forum: Bioinformatics 09-20-2016, 08:29 PM
Replies: 4
Views: 1,641
Posted By Rangika
Thank you Michael for your answer. Regards ...

Thank you Michael for your answer.

Regards
Sumudu
Forum: Bioinformatics 09-20-2016, 01:14 AM
Replies: 4
Views: 1,641
Posted By Rangika
Thank you Michael. My dataset is DNA-seq. Can I...

Thank you Michael. My dataset is DNA-seq. Can I use RSeQC tools to check alignment for DNA data as well. Do you suggest RSeQC statistics would lead in to better BAM selection?

Appreciate if you...
Forum: Bioinformatics 09-19-2016, 08:37 PM
Replies: 4
Views: 1,641
Posted By Rangika
Question Selecting the best alignment BAM file

Hi,

I have a PE dataset 300bp inserts by illumina MiSeq. I aligned the raw data using BWA-mem. Mapping statistics generated using Samtools flagstat are below.

5541008 + 0 in total (QC-passed...
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