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Forum: Bioinformatics 12-21-2010, 06:35 PM
Replies: 2
Views: 4,551
Posted By keycard
A question about tophat -g/--max-multihits option

If the --max-multihits option of tophat is set to 1, am I going to get the "best" alignment for the read? For example, will tophat pick the alignment for a read based on the best mapping score or...
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