SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 5 of 5
Search took 0.00 seconds.
Search: Posts Made By: Esther
Forum: Bioinformatics 08-25-2010, 04:44 AM
Replies: 23
Views: 7,393
Posted By Esther
Lastz help

Hi all,

I'm trying to get lastz to compare some sequences to the human reference genome. This is the command I'm using:

lastz /path/to/data/fastafile.fasta[multiple]...
Forum: Bioinformatics 08-04-2010, 04:19 AM
Replies: 3
Views: 1,918
Posted By Esther
Worked like a charm, thank you. I feel kinda...

Worked like a charm, thank you. I feel kinda silly for not thinking of this. The strange output is gone and the localalign is running, so we'll see how it workes out.
Forum: Bioinformatics 08-04-2010, 12:56 AM
Replies: 3
Views: 1,918
Posted By Esther
BFAST match/localalign help

Hi,

I'm trying to create a bfast localalign but it doesn't work. I've located the problem with bfast match. The match appears to be working, but I can't find the *.bmf file. This is what happens:...
Forum: Bioinformatics 07-28-2010, 01:17 AM
Replies: 4
Views: 2,298
Posted By Esther
Thank you, the dos2unix did the trick. The...

Thank you, the dos2unix did the trick. The reference file was indeed created in Windows.
Forum: Bioinformatics 07-27-2010, 06:40 AM
Replies: 4
Views: 2,298
Posted By Esther
BFAST fasta2brg help

I'm trying to create a reference genome with BFAST using the inhouse reference genome. This file contains all the chromosomes of the human genome and is ~3 GB large. However, when I execute the...
Showing results 1 to 5 of 5

 


All times are GMT -8. The time now is 05:59 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2022, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO