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Forum: Genomic Resequencing 08-20-2018, 12:05 PM
Replies: 2
Views: 4,574
Posted By htetre
I am currently trying to call SNPs with the...

I am currently trying to call SNPs with the problematic file alone. I am able to get expected results, ie high support for one GT and low support for the other two GT with the "non-problematic" file.
Forum: Genomic Resequencing 08-15-2018, 11:01 AM
Replies: 2
Views: 4,574
Posted By htetre
PL high support for each GT for all SNPS

Hello,

I have two populations I am trying to discover SNPs for. In my .vcf file one population has the GT and the PL is 0,0,0 for every single snp ie 0/1, 0/0, and 1/1. Does anyone know where I...
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