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Forum: Bioinformatics 01-10-2019, 07:32 AM
Replies: 2
Views: 2,251
Posted By SNPsaurus
You can filter your vcf for variants that fit...

You can filter your vcf for variants that fit your minor allele threshold with vcftools https://vcftools.github.io/man_latest.html

From the docs:
--non-ref-af <float>
--max-non-ref-af <float> ...
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