SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 3 of 3
Search took 0.00 seconds.
Search: Posts Made By: GenoMax
Forum: Bioinformatics 03-02-2018, 07:25 AM
Replies: 5
Views: 2,987
Posted By GenoMax
If you know the barcode sequences then you could...

If you know the barcode sequences then you could run bbduk in "match" mode and require the match to be strict of 8 bp on 5'-end of the read (restrictleft=7). You may have to try a few command options...
Forum: Bioinformatics 02-19-2018, 04:30 AM
Replies: 5
Views: 2,987
Posted By GenoMax
You can use something like literal=TTTTTTTT k=5 ...

You can use something like literal=TTTTTTTT k=5 with bbduk.sh to remove those reads.
Forum: Bioinformatics 02-15-2018, 06:52 AM
Replies: 5
Views: 2,987
Posted By GenoMax
Can you only try "-Xmx24052m threads=12" ? Don't...

Can you only try "-Xmx24052m threads=12" ? Don't use -Xms=.
Showing results 1 to 3 of 3

 


All times are GMT -8. The time now is 11:28 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO