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Forum: The Pipeline 11-17-2010, 02:03 AM
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Posted By wanguan2000
Help finish the pipeline for human whole exome sequencing with paired reads data

The pipeline for human whole exome sequencing with paired reads data


A, Align samples to genome (BWA): get BAM files
bowtie
1./bowtie -t -y -S hg18 -1 reads_1.fq -2 reads_2.fq reads.sam
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