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Forum: Bioinformatics

05-10-2016, 01:02 PM

Replies: 7

Issue with BLAST database path!

Views: 5,462

Posted By GenoMax

Great. Use the following. I suggest that you...

Great. Use the following. I suggest that you remove (and not use) any spaces in the file/dir names.

$ blastn -query '/home/gullived/Daniel_Data/MEtabat...

Forum: Bioinformatics

05-10-2016, 10:52 AM

Replies: 7

Issue with BLAST database path!

Views: 5,462

Posted By GenoMax

Try this. $ /bin/ls -lh...

Try this.

$ /bin/ls -lh /home/gullived/ncbi-blast-2.3.0+/db/env

There should be 240 files for env_nt.NN.n**. You don't need to post the entire output, if you see a lot of files.

Forum: Bioinformatics

05-10-2016, 10:32 AM

Replies: 7

Issue with BLAST database path!

Views: 5,462

Posted By GenoMax

Looks like you messed up your default $PATH when...

Looks like you messed up your default $PATH when you tried to change it. That should be fixable by a reboot. In mean time try /bin/ls and the rest of the command above and post the results.

Forum: Bioinformatics

05-10-2016, 10:16 AM

Replies: 7

Issue with BLAST database path!

Views: 5,462

Posted By GenoMax

Can you post a listing of $ ls -lh...

Can you post a listing of

$ ls -lh /home/gullived/ncbi-blast-2.3.0+/db/env

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