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Forum: Bioinformatics 08-07-2016, 03:00 AM
Replies: 4
Views: 3,952
Posted By dovah
oh thanks Brian. I was so worried :P

oh thanks Brian. I was so worried :P
Forum: Bioinformatics 08-05-2016, 02:03 PM
Replies: 4
Views: 3,952
Posted By dovah
Ha ok, so it should be fine. Have you ever used...

Ha ok, so it should be fine. Have you ever used Cufflinks on bam file generated by Hisat2 by the way? Because it is taking a huge lot of time. I can spot CPU usage (~99%) but no tmp files in the...
Forum: Bioinformatics 08-05-2016, 06:20 AM
Replies: 4
Views: 3,952
Posted By dovah
XS tags in hisat2 alignment

Hi,

I had some troubles running Cufflinks with input mapping from HIsat2 (sam/bam).

Cufflinks man page (http://http://cole-trapnell-lab.github.io/cufflinks/cufflinks/index.html) says that...
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