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Forum: Bioinformatics

08-07-2016, 03:00 AM

Replies: 4

XS tags in hisat2 alignment

Views: 3,952

Posted By dovah

oh thanks Brian. I was so worried :P

oh thanks Brian. I was so worried :P

Forum: Bioinformatics

08-05-2016, 02:03 PM

Replies: 4

XS tags in hisat2 alignment

Views: 3,952

Posted By dovah

Ha ok, so it should be fine. Have you ever used...

Ha ok, so it should be fine. Have you ever used Cufflinks on bam file generated by Hisat2 by the way? Because it is taking a huge lot of time. I can spot CPU usage (~99%) but no tmp files in the...

Forum: Bioinformatics

08-05-2016, 06:20 AM

Replies: 4

XS tags in hisat2 alignment

Views: 3,952

Posted By dovah

XS tags in hisat2 alignment

Hi,

I had some troubles running Cufflinks with input mapping from HIsat2 (sam/bam).

Cufflinks man page (http://http://cole-trapnell-lab.github.io/cufflinks/cufflinks/index.html) says that...

Showing results 1 to 3 of 3

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