SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 3 of 3
Search took 0.00 seconds.
Search: Posts Made By: DrYak
Forum: Bioinformatics 03-02-2018, 05:47 AM
Replies: 5
Views: 2,987
Posted By DrYak
Smile worked finally - but had to increase kmer and literal..

Hi,

Thank you, I finally got it to work with literal, but I had to increase the length of the literal to 20 X T and increase the kmer to 25. With literal=TTTTTTTT k=5 I got 98% of the reads...
Forum: Bioinformatics 02-18-2018, 11:08 PM
Replies: 5
Views: 2,987
Posted By DrYak
Hi, Thank you for the suggestion. With...

Hi,

Thank you for the suggestion.

With the "-Xmx24052m threads=12" flag it runs with 12 threads and the memory but still has an ArrayIndexOutOfBoundsException in multiple threads...
:confused:...
Forum: Bioinformatics 02-15-2018, 06:37 AM
Replies: 5
Views: 2,987
Posted By DrYak
Question BBDuk java error when filtering using entropy?

Hello,

I am having an issue with a java error when trying to use BBDuk to remove low entropy sequences from a fastq file. The libraries were made using ribozero so there are a number of polyT...
Showing results 1 to 3 of 3

 


All times are GMT -8. The time now is 11:36 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO