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Forum: Bioinformatics 07-20-2016, 08:09 AM
Replies: 3
Views: 3,130
Posted By ramiro2k
I actually found the answer in another post from...

I actually found the answer in another post from 2011:

One of the updates going from version 1.3 to version 2 (quoting from the cufflinks website here) was:

"After substantial performance...
Forum: Bioinformatics 07-09-2016, 12:56 PM
Replies: 3
Views: 3,130
Posted By ramiro2k
Ran it with replicates with the same result

Hello,

Thank you so much for your reply. I ran it with two replicates and got a similar result, nothing significant, nothing expressed in the splicing.diff. I had looked at the link you...
Forum: Bioinformatics 06-22-2016, 10:17 AM
Replies: 3
Views: 3,130
Posted By ramiro2k
NOTEST everywhere with cuffdiff

Hello, I am running the following pipeline:

tophat -p 4 -G genes.gtf -o sample1TopHat genome sample1R1.fastq sample1R2.fastq
tophat -p 4 -G genes.gtf -o sample2TopHat genome...
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