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Forum: Bioinformatics 02-06-2014, 12:21 AM
Replies: 1
Views: 1,591
Posted By desmo
How the GQ of a SNP is calculated by UnifiedGenotyper?

Hi, I'm trying to understand how does UnifiedGenotyper usually calculate the GQ of a SNP.
I understood the model to calculate the Likelihood of all the genotypes (AA,AC, AG,AT,CC,CG,CT,GG,GT,TT).
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