Forum: Academic/Non-Profit Jobs
07-09-2019, 07:27 AM
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Replies: 0
Views: 410
Computational biology in Heidelberg
At the Center for Molecular Biology (https://www.zmbh.uni-heidelberg.de/) of Heidelberg University, we are seeking
two computational scientists
to join the research group of Dr. Simon Anders...
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Forum: Academic/Non-Profit Jobs
11-27-2018, 02:50 AM
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Replies: 0
Views: 656
computational biology in Heidelberg
At Heidelberg University, we have vacancies for
1 PhD student and 2 post-doc positions
for computational scientists with skills in data science, statistics or bioinformatics.
All three...
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Forum: Academic/Non-Profit Jobs
10-18-2018, 03:20 PM
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Replies: 0
Views: 580
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Forum: Illumina/Solexa
07-13-2017, 05:45 AM
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Replies: 18
Views: 15,180
Not sure whetehr ther's mich point in reviving...
Not sure whetehr ther's mich point in reviving this old thread, hence just to clarify:
Of course, fixed models with empirical Bayes shrinkage cannot replace any form of mixed models. Especially...
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Forum: Academic/Non-Profit Jobs
04-29-2017, 08:20 AM
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Replies: 0
Views: 1,071
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Forum: RNA Sequencing
07-23-2016, 10:55 AM
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Replies: 45
Views: 24,911
If each gene is on its own pseudo-contig, you...
If each gene is on its own pseudo-contig, you don't need htseq-count. You just count how often you see each gene ID in the third column of your SAM file which contains the chromosome to which the...
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Forum: RNA Sequencing
07-21-2016, 12:57 AM
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Replies: 45
Views: 24,911
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Forum: Academic/Non-Profit Jobs
02-10-2016, 04:19 AM
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Replies: 0
Views: 715
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Forum: Bioinformatics
10-29-2015, 07:33 AM
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Replies: 191
Views: 78,390
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Forum: Academic/Non-Profit Jobs
06-30-2015, 04:15 AM
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Replies: 0
Views: 1,761
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Forum: RNA Sequencing
06-21-2015, 08:39 AM
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Replies: 45
Views: 24,911
Be careful here. In this file, the "exon" lines...
Be careful here. In this file, the "exon" lines only contain transcript IDs ("mRNA_1") but not gene IDs ("gene_1") in their "Parent" fields. This will not work, because if an exon appears in several...
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Forum: Bioinformatics
03-10-2015, 02:10 PM
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Replies: 6
Views: 2,792
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Forum: Bioinformatics
03-10-2015, 02:04 PM
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Replies: 6
Views: 2,792
Short answer: Don't worry, it's all fine. The...
Short answer: Don't worry, it's all fine. The values are nearly the same because they should be.
Long answer: Well, this will be long...
This is normal, but a bit unfortunate. In DESeq2, we use...
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Forum: Bioinformatics
02-18-2015, 11:46 PM
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Replies: 123
Views: 50,322
How exactly have you called the "results"...
How exactly have you called the "results" function?
In any case, the first line of the output of the results function indicates the exact comparison that is reported. Can you check whether this...
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Forum: Bioinformatics
01-07-2015, 03:52 PM
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Replies: 123
Views: 50,322
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Forum: Illumina/Solexa
12-15-2014, 06:27 AM
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Replies: 18
Views: 15,180
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Forum: Bioinformatics
11-21-2014, 01:45 AM
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Replies: 17
Views: 24,451
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Forum: RNA Sequencing
09-26-2014, 12:23 PM
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Replies: 11
Views: 4,302
That was the point of Alejandro's script: to...
That was the point of Alejandro's script: to replace the apostrophes and semicolons that confused the parser with something else. I have fixed the parser a while ago, however, so there is no need any...
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Forum: RNA Sequencing
08-12-2014, 03:57 PM
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Replies: 24
Views: 11,631
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Forum: RNA Sequencing
08-12-2014, 03:56 PM
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Replies: 24
Views: 11,631
Please don't highjack an old thread to post...
Please don't highjack an old thread to post unrelated questions. This makes it impossible for other readers to find pertinent information.
Also, please don't put several unrealted questions into...
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Forum: Bioinformatics
08-12-2014, 06:51 AM
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Replies: 191
Views: 78,390
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Forum: Bioinformatics
08-12-2014, 03:58 AM
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Replies: 191
Views: 78,390
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Forum: Bioinformatics
08-12-2014, 02:44 AM
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Replies: 191
Views: 78,390
You asked me this before, but Ididn't reply,...
You asked me this before, but Ididn't reply, right? Sorry about that, I was a bit overwhelmed with mails.
The bad news is: I have no clue why it does not work; I have never worked with the...
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Forum: RNA Sequencing
08-06-2014, 06:53 AM
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Replies: 35
Views: 25,708
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Forum: RNA Sequencing
07-29-2014, 10:46 PM
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Replies: 35
Views: 25,708
It is very hard to answer your question without...
It is very hard to answer your question without more information. What is the biology of your experiment? What are you comparing? How do the diagniostic plots (MA plot and dispersion plot) look like?
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