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Search: Posts Made By: Sheree Yau
Forum: Introductions 11-07-2014, 12:47 AM
Replies: 2
Views: 1,158
Posted By Sheree Yau
Thanks for the kind words Melissa! I'm working in...

Thanks for the kind words Melissa! I'm working in a different group (on the smallest eukaryotes with not-so giant viruses) but we do have some collaborations with Jean-Michel Claverie's group.
Forum: Bioinformatics 10-30-2014, 02:13 AM
Replies: 3
Views: 1,201
Posted By Sheree Yau
Thanks very much the advice. It's very helpful...

Thanks very much the advice. It's very helpful for us newbies out there to be pointed on the right track.
Forum: Bioinformatics 10-30-2014, 02:05 AM
Replies: 4
Views: 1,721
Posted By Sheree Yau
I'm also just starting to use cufflinks following...

I'm also just starting to use cufflinks following the Nature Protocols paper. In the paper they provide a genes.gtf file at the cuffmerge stage, which as WhatsOEver says, is implementing cuffcompare...
Forum: Bioinformatics 10-28-2014, 06:45 AM
Replies: 4
Views: 1,443
Posted By Sheree Yau
Yes agreed! MAUVE is very nice for comparing...

Yes agreed! MAUVE is very nice for comparing multiple bacterial genomes.
Forum: Bioinformatics 10-28-2014, 06:27 AM
Replies: 4
Views: 1,443
Posted By Sheree Yau
I think you answered your own question with your...

I think you answered your own question with your tests. NUCmer is faster than MEGABLAST, but perhaps less sensitive. So depending on your project, is speed more important than accuracy?

Another...
Forum: Introductions 09-23-2014, 02:41 AM
Replies: 2
Views: 1,158
Posted By Sheree Yau
Hi from Banyuls-sur-Mer, France

Hello SeqAnswers community,

After many years of profiting (mooching) from my anonymous friends on the internet, I am finally pledging to make a contribution by active participation as best I can. ...
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