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Forum: Bioinformatics 02-17-2015, 11:21 PM
Replies: 24
Views: 5,789
Posted By dpryan
If cufflinks worked with the file then presumably...

If cufflinks worked with the file then presumably it's a bug in featureCounts. It would be good if you could notify the author.
Forum: Bioinformatics 02-17-2015, 05:39 AM
Replies: 24
Views: 5,789
Posted By dpryan
If what GenoMax suggested doesn't indicate where...

If what GenoMax suggested doesn't indicate where the problem is, then try htseq-count. If that runs into problems too then you know with certainty that you have issues with the BAM files. If it...
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