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Forum: Literature Watch 12-17-2009, 03:21 AM
Replies: 0
Views: 1,239
Posted By -daf-
An oestrogen-receptor-a-bound human chromatin interactome

Nature. 2009 Nov 5;462(7269):58-64.
An oestrogen-receptor-alpha-bound human chromatin interactome.

Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, Mohamed YB, Orlov YL, Velkov S, Ho A, Mei PH, Chew EG,...
Forum: Bioinformatics 06-10-2009, 04:03 AM
Replies: 513
Views: 191,738
Posted By -daf-
Sorry for the inconvenience, i have achieved...

Sorry for the inconvenience, i have achieved success with linux ftp command
Forum: Bioinformatics 06-09-2009, 03:33 AM
Replies: 513
Views: 191,738
Posted By -daf-
Hello, thanks for bowtie I've problem with...

Hello, thanks for bowtie
I've problem with downloading bowtie index for human genome from ftp://ftp.cbcb.umd.edu/pub/data/bowtie_indexes/h_sapiens_asm.ebwt.zip. I have no problem with smaller...
Forum: General 04-08-2009, 04:31 AM
Replies: 2
Views: 2,750
Posted By -daf-
look at Mauve http://gel.ahabs.wisc.edu/mauve/...

look at Mauve
http://gel.ahabs.wisc.edu/mauve/
Aaron C.E. Darling, Bob Mau, Frederick R. Blatter, and Nicole T. Perna. 2004. Mauve: multiple alignment of conserved genomic sequence with...
Forum: Bioinformatics 02-24-2009, 01:59 AM
Replies: 1
Views: 2,099
Posted By -daf-
log10(x)=log(x)/log(10), e = 1 - P, ...

log10(x)=log(x)/log(10),
e = 1 - P,
log(x)=-log(1/x),
->Maq=Solexa
Forum: Bioinformatics 02-04-2009, 09:48 AM
Replies: 0
Views: 1,770
Posted By -daf-
Question about pthred quality

Hi,
i have a question about phred quality values in fastq format(Sanger).
I know that phred quality = character_code - 33 and that error probability is 10^(-phred quality/10).
So for "...
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