SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 13 of 13
Search took 0.00 seconds.
Search: Posts Made By: Hyunmin
Forum: Bioinformatics 05-14-2014, 02:10 AM
Replies: 4
Views: 2,276
Posted By Hyunmin
sorry, my late thread.. I solve the problem...

sorry, my late thread..

I solve the problem with upper.
Thanks!
Forum: De novo discovery 04-14-2014, 10:19 PM
Replies: 4
Views: 8,193
Posted By Hyunmin
First, Thanks for your reply. Yes, I...

First, Thanks for your reply.



Yes, I know it.

but I tried to already it . and you know "-multi" is the same "-m tsu, ssu, lsu".

I have no idea. and I solved it with another method....
Forum: De novo discovery 04-09-2014, 06:47 PM
Replies: 4
Views: 8,193
Posted By Hyunmin
(Problem) Prediction rRNA with rnammer 1.2

Hi,

I tried to predict the rRNA in scaffold. (de novo assembly genome)
My sample is human genome and I set the euk with rnammer param.

My command..
perl rnammer -S euk -multi -gff rnammer.gff...
Forum: Bioinformatics 03-25-2014, 08:19 PM
Replies: 4
Views: 2,276
Posted By Hyunmin
Using lastz (FAILURE: in load_fasta_sequence)

This is my lastz command
$ lastz hg19/chrAll.fa[multiple] merged.fsa

Error
FAILURE: in load_fasta_sequence for hg19/chrAll.fa, sequence length 2,084,766,314+115,169,878 exceeds maximum...
Forum: Bioinformatics 02-20-2014, 10:06 PM
Replies: 6
Views: 2,130
Posted By Hyunmin
I tried it in above. But, as before I got the...

I tried it in above.
But, as before I got the same error. :confused:
Anyway, thanks for your comment.
Forum: Bioinformatics 02-19-2014, 06:07 AM
Replies: 6
Views: 2,130
Posted By Hyunmin
I miss one. When I tried to view the example...

I miss one.

When I tried to view the example data in GBrowse_syn package, it is works.
(rice genome) but, with this custom data isn't works
Forum: Bioinformatics 02-19-2014, 06:04 AM
Replies: 6
Views: 2,130
Posted By Hyunmin
Thanks, for your reply. I'll try to change. ...

Thanks, for your reply. I'll try to change.

Could you help me how I can change the proxy latency in linux server? Is it rely on the server configuration? or my computer?
Forum: Bioinformatics 02-19-2014, 01:06 AM
Replies: 6
Views: 2,130
Posted By Hyunmin
Genome Browser (for Synteny)

When I using the GBrowse synteny (gbrowse_syn), I got the error in above.
How can I handle this error?

Below is my database set. (test custom data)

mysql> select * from map;...
Forum: Bioinformatics 09-26-2013, 01:23 AM
Replies: 3
Views: 2,669
Posted By Hyunmin
I mean, :D (2) running a sample across...

I mean, :D

(2) running a sample across multiple lanes

If we can sequence 'A' genome with 2 lane, the output(rawdata) has 2 lane.

*this data size is for example.
...
Forum: Bioinformatics 09-25-2013, 07:09 PM
Replies: 3
Views: 2,669
Posted By Hyunmin
Why divide the lane in sequencing?

Is there the important reason when sequencing the genome in some lane?

For example, BGI sequencing data has raw data with some lane.

I guess, it can decrease the risk of failed sequencing in...
Forum: Bioinformatics 01-06-2013, 03:36 PM
Replies: 8
Views: 3,759
Posted By Hyunmin
Thank you for your kindly reply. It's very...

Thank you for your kindly reply.
It's very helpful for me.

In fact, I wrote them incorrectly.
My real question is "Why not sequenced male individual in ENSEMBL mammal reference genome?"

I...
Forum: Bioinformatics 01-02-2013, 05:07 PM
Replies: 8
Views: 3,759
Posted By Hyunmin
Why not sequencing female individual in reference genome?

Why not sequencing female individual in reference genome?
->
Why not sequencing male individual in reference genome?

Hi, I'm wondering about the sex chromosome information in public reference...
Forum: Introductions 03-01-2012, 08:05 PM
Replies: 0
Views: 928
Posted By Hyunmin
Hello, got it!

Hello, nice to meet u.

I'm Hyunmin Kim who is researcher in Korea.
My major is bioinformatics.

I'm very happy to meet SEQanswers Community.
I wish to get more about Bioinformatics in this...
Showing results 1 to 13 of 13

 


All times are GMT -8. The time now is 09:11 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO