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Forum: Bioinformatics 01-21-2013, 11:53 AM
Replies: 36
Views: 10,566
Posted By ryantkoehler
That did the trick! Thanks very much, -Ryan

That did the trick!
Thanks very much,
-Ryan
Forum: Bioinformatics 01-21-2013, 11:30 AM
Replies: 36
Views: 10,566
Posted By ryantkoehler
Tried it again without the sudo command, but...

Tried it again without the sudo command, but still stuck:

Ryans-MacBook-Pro-2 [HTSeq-0.5.3p9] 668> bash
bash-3.2$ more sham
export CC=llvm-gcc-4.2
export CXX=llvm-g++-4.2
python setup.py build...
Forum: Bioinformatics 01-21-2013, 10:55 AM
Replies: 36
Views: 10,566
Posted By ryantkoehler
Hi (and thanks for quick response!) I...

Hi (and thanks for quick response!)

I normally use tcsh, but I tried the install in bash where I think the correct variables were set(?). I created a short script ("sham") that first sets compiler...
Forum: Bioinformatics 01-21-2013, 10:31 AM
Replies: 36
Views: 10,566
Posted By ryantkoehler
Hi Did this ever get fixed? I tried all the...

Hi

Did this ever get fixed? I tried all the above steps but am still stuck (get the same errors; shown below).
I have a Mac book pro OS X 10.8.2 (just upgraded from 10.6), python 2.7.2, and...
Forum: Bioinformatics 07-26-2011, 03:43 PM
Replies: 1
Views: 5,113
Posted By ryantkoehler
Question exon numbers in UCSC genome browser

Hi

Is there an (easy, pre-canned) way to display exon numbering in the UCSC genome browser? Obviously exon/intron information is present in the various gene tracts (hence think/thin blocks and...
Forum: General 10-05-2009, 09:37 AM
Replies: 0
Views: 4,771
Posted By ryantkoehler
Platform comparison of read lengths

Hi all

Does anyone know of a good comparison of next gen sequencing platform read specs? In particular, I'm interested in common/maximal read lengths, mate-pair insert ranges, and ideally, error...
Forum: General 09-24-2009, 04:27 PM
Replies: 6
Views: 4,256
Posted By ryantkoehler
This is a good review of sequencing systems, from...

This is a good review of sequencing systems, from Sanger to Next-gen to Next-next-gen. Seemed pretty concise and pretty complete (and plenty of pictures ;-)

Wilhelm Ansorge. Next-generation DNA...
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