Forum: De novo discovery
05-26-2011, 07:54 AM
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Replies: 2
Views: 2,168
I guess that this is nearly impossible. To...
I guess that this is nearly impossible. To compare transcripts, they must either have the same positions in case and control (for all exons of a transcript) or you need a kind of similarity measure...
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Forum: Literature Watch
05-19-2011, 12:56 AM
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Replies: 1
Views: 2,884
Hi,
your sample data bases on hg18 and its'...
Hi,
your sample data bases on hg18 and its' annotations. Could you please describe how to prepare hg19 annotation files properly? Or: much better ;) Could you provide these files as a download?
...
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Forum: Bioinformatics
04-18-2011, 06:49 AM
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Replies: 3
Views: 2,500
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Forum: SOLiD
01-21-2011, 01:15 AM
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Replies: 40
Views: 12,348
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Forum: Bioinformatics
11-21-2010, 03:30 AM
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Replies: 15
Views: 4,969
Hi,
I had the same problem with cuffcompare. I...
Hi,
I had the same problem with cuffcompare. I think cuffcompare generates illegal symbols if the strand orientation is unknown. Do you have entries like "^@" in the 7th column?
I fixed it with:...
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Forum: Bioinformatics
10-25-2010, 03:50 AM
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Replies: 2
Views: 4,024
same problem
Hi,
did you find a reason for this error? I get the same error running
tophat -p 8 --output-dir output/26_1 genome/Homo
_sapiens.hg19/hg19 readfiles/s_100617_3_1.fastq
...
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Forum: Bioinformatics
08-12-2010, 12:35 PM
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Replies: 19
Views: 9,908
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Forum: Bioinformatics
08-12-2010, 04:31 AM
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Replies: 19
Views: 9,908
Hi,
I ran SpliceMap on 2*76bp paired end...
Hi,
I ran SpliceMap on 2*76bp paired end reads (Mouse) and it did not produce any splice junction. (the bed files are empty). I expected that the problem was connected to the problem Lix had, so I...
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Forum: Bioinformatics
08-03-2010, 02:46 AM
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Replies: 5
Views: 5,023
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