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Search: Posts Made By: shahid.manzoor
Forum: Bioinformatics 03-03-2010, 07:20 AM
Replies: 7
Views: 3,386
Posted By shahid.manzoor
hi me shahid plz can any body help me i m using...

hi me shahid plz can any body help me i m using velvet for denovo and producing afg file and from that afg file creating amos bank file but when i run amos validate command on that bnk folder it give...
Forum: Bioinformatics 02-05-2010, 05:14 AM
Replies: 5
Views: 2,276
Posted By shahid.manzoor
I have bacteria data for illumina in scarf format...

I have bacteria data for illumina in scarf format which i convert into fastq format but by using Mosaik build command it give an error like -
parsing paired-end/mate-pair FASTQ files:
ERROR: The...
Forum: Bioinformatics 02-02-2010, 03:08 AM
Replies: 7
Views: 3,418
Posted By shahid.manzoor
hi all I m using Mosaik and create jump database...

hi all I m using Mosaik and create jump database with Mosaikjumb command which is successfully create the jump database but after that when i run MosaikAligner command it give error like this ERROR:...
Forum: Bioinformatics 02-02-2010, 02:08 AM
Replies: 9
Views: 2,761
Posted By shahid.manzoor
Hi all I want to use Mosaik for assembling a...

Hi all I want to use Mosaik for assembling a bacterial genome but the problem is that I can't access the API because when I go c++ or perl directory and write make it's gives error so any one can...
Forum: Bioinformatics 01-29-2010, 08:59 AM
Replies: 4
Views: 1,841
Posted By shahid.manzoor
I want to use Mosaik API but when i execute make...

I want to use Mosaik API but when i execute make command in c++ or perl it give error like MosaikAlignment.h:441: error: ‘uint64_t’ does not name a type
MosaikAlignment.h:442: error: ‘uint64_t’ does...
Forum: Bioinformatics 07-02-2009, 03:55 AM
Replies: 14
Views: 6,171
Posted By shahid.manzoor
hi I want to run Mosaik so I install ubuntu OS...

hi I want to run Mosaik so I install ubuntu OS and download Mosaik but the problem is when I try to execute MosaikBuild it give error that Binary file can't be executed. Any body can help me about...
Forum: De novo discovery 06-26-2009, 06:36 AM
Replies: 15
Views: 8,328
Posted By shahid.manzoor
I have reads data for pollen beetle from illumina...

I have reads data for pollen beetle from illumina machine of 75bp for paired end allignment. i want to know that velvet will perform well for these to assemble by using de novo. how many memory will...
Forum: Bioinformatics 06-20-2009, 02:03 AM
Replies: 1
Views: 1,924
Posted By shahid.manzoor
Pollen Beetle Reference Sequence?

Hi all i m shahid. I want to sequence Pollen beetle (Meligeteus aeneus) genome using paired-end technique with Illumina system. Can any body help me to find reference sequence for this pollen beetle...
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