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Search: Posts Made By: yjlui
Forum: Bioinformatics 11-11-2010, 07:14 AM
Replies: 26
Views: 14,636
Posted By yjlui
Thanks for the prompt reply, Adam! Just emailed...

Thanks for the prompt reply, Adam! Just emailed you a small dataset built from my SAM file.
Forum: Bioinformatics 11-10-2010, 01:25 PM
Replies: 26
Views: 14,636
Posted By yjlui
Cufflinks

I was wondering if anyone knows what the status in genes.expr and transcripts.expr (output files of Cufflinks) means? I can't find the meaning in the manual. A possible meaning is "can be one of OK...
Forum: Bioinformatics 08-13-2010, 10:19 AM
Replies: 4
Views: 3,462
Posted By yjlui
I have the same problem too, and here are several...

I have the same problem too, and here are several examples from my SAM file.
...
Forum: Bioinformatics 07-29-2010, 10:44 AM
Replies: 0
Views: 1,807
Posted By yjlui
Questions about TopHat

I must say I'm new to bioinformatics...

- Since I'm using paired-end (Illumina 36bp) data, I need to provide the expected (mean) inner distance between mate pairs when using TopHat. For example,...
Forum: Bioinformatics 05-18-2010, 09:09 AM
Replies: 0
Views: 1,491
Posted By yjlui
Questions about Cufflinks

I must say I'm new to Cufflinks.

I tried to use my own reference annotation in Cufflinks, but got no match between my sequences and the Ensembl GTF file:

- Used TopHat v1.0.12
- Used GRCh37...
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