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Forum: Bioinformatics 06-06-2013, 11:20 AM
Replies: 2
Views: 1,784
Posted By sudhirvarma
If you are comfortable with any of the common...

If you are comfortable with any of the common short-read aligners you can also use them, after making the corresponding index using your reference sequence. For example, using bowtie2

#Build index...
Forum: Bioinformatics 06-06-2013, 08:30 AM
Replies: 6
Views: 3,126
Posted By sudhirvarma
SRA is the source

Hi SquirrelSeq
The NCBI Short Read Archive has several E. coli and S. cervisiae datasets, e.g.

E. coli (http://www.ncbi.nlm.nih.gov/sra/?term=%22Escherichia+coli%22[orgn%3A__txid562])

S....
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