Forum: Bioinformatics
03-31-2013, 05:19 PM
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Replies: 38
Views: 12,197
adarob, I have a similar question. I first use...
adarob, I have a similar question. I first use tophat to get the bam file and then run cufflinks with --GTF command, which goes wrong with message like:
You are using Cufflinks v2.0.2, which is the...
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Forum: Bioinformatics
12-18-2011, 09:46 PM
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Replies: 0
Views: 2,957
how to do annotation on Breakdancer result
I've got some breakdancer results on SV. But the format is not in VCF. Beside, the outcome of breakdancer is an estimate of structural variation. It couldn't gave exact breakpoints, nor the sequence...
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Forum: Bioinformatics
11-29-2011, 09:44 PM
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Replies: 2
Views: 2,391
RDXplorer
I'm using SVmerge. One of the tools is RDXplorer. I run the run.sh. It first picked q0 items and write into a sam file. And then it uses samtools mpileup to call variants. But it doesn't work,...
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Forum: Bioinformatics
11-03-2011, 08:29 PM
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Replies: 3
Views: 1,890
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Forum: Bioinformatics
10-26-2011, 05:54 AM
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Replies: 32
Views: 16,460
Thank you very much. It works fine.
I still...
Thank you very much. It works fine.
I still have some questions for the output of pindel:
1. the LI output has a different header and I don't quite understand. The attach is one output. I don't...
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Forum: Bioinformatics
10-25-2011, 02:33 AM
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Replies: 32
Views: 16,460
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