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Forum: Bioinformatics 06-22-2010, 01:36 AM
Replies: 11
Views: 12,208
Posted By bassu
Thanks all, @Rao: yes i am using RNA-seq data. ...

Thanks all,
@Rao: yes i am using RNA-seq data.

@mf_bill: thanks for your valuable comment, I was wondering whether my system configuration was right ? Even though BWT, tophat will produce huge...
Forum: Bioinformatics 06-21-2010, 06:29 AM
Replies: 11
Views: 12,208
Posted By bassu
Question Tophat Run time

Dear all,

I am currently running tophat to align human genome reference(hg19 bowtie index) to illumina pair-end data of size 17Gb each(17*2). Its almost 24 houurs and its still running. I...
Forum: General 06-19-2010, 04:48 AM
Replies: 2
Views: 9,007
Posted By bassu
Difference between mate pair and pair end

Hi All,

i am confused between two terminology Mate paired and Pair end. Please help me out on this.

Thanks
Forum: General 06-19-2010, 03:07 AM
Replies: 4
Views: 5,313
Posted By bassu
Dear mgogol & flobpf, Thanks for your kind...

Dear mgogol & flobpf,

Thanks for your kind informations, i will work with your provided information and let you informed about my progress time to time.

Once again thank you guys!!
Forum: General 06-18-2010, 01:53 AM
Replies: 4
Views: 5,313
Posted By bassu
Smile Ngs data analysis

Dear All,

As a part of my curriculum, i am currently planning to do a pipeline like sort on NGS data. Through various reading and other sorts i found that there are some leading tools like...
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