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Search: Posts Made By: renesh
Forum: Bioinformatics 04-26-2012, 02:39 PM
Replies: 7
Views: 5,996
Posted By renesh
reciprocal blast

How to do reciprocal blast for two datasets?
Forum: Bioinformatics 03-22-2012, 04:23 PM
Replies: 0
Views: 1,049
Posted By renesh
Syntenic map or ideograms

Hi fiends,
I want to create a syntenic map for transcriptome with genome of the species.
Please suggest me any good tool for drawing syntenic and ideograms
Forum: Bioinformatics 03-17-2012, 02:47 PM
Replies: 7
Views: 4,762
Posted By renesh
Thanks I used that options(Tip label) for...

Thanks

I used that options(Tip label) for colour and font. But, using that option i able to change only font, but not the colour. Therefore, i changed the colour of branches to represent...
Forum: Bioinformatics 03-16-2012, 01:44 PM
Replies: 7
Views: 4,762
Posted By renesh
thank for your reply. Can you suggest me any...

thank for your reply. Can you suggest me any other tool. This software is good but it can not change the size and colour of the font of taxa.
Forum: Bioinformatics 03-16-2012, 09:59 AM
Replies: 7
Views: 4,762
Posted By renesh
phylogenetic tree

Hi friends,

I want colour the particular branch and taxa in phylogenetic tree to represent it effectively. I tried in various packages such as phylip, mega4, ugene but i am unable to do it. When i...
Forum: MGISEQ (FKA Complete Genomics) 03-05-2012, 02:14 PM
Replies: 0
Views: 2,244
Posted By renesh
chromosome map

I want to find the coverage of contigs to reference genome. I did the mapping with reference genome. I want output in graphical format with all chromosome and at what position contigs are located on...
Forum: MGISEQ (FKA Complete Genomics) 03-05-2012, 01:49 PM
Replies: 3
Views: 8,189
Posted By renesh
BLAST parameters for large datasets

I am mapping contig sequences with plant database (size 2 GB). I am using tblastx and blastx search tool. Can anyone suggest what parameter for blastx/tblastx i should use for mapping with database?....
Forum: MGISEQ (FKA Complete Genomics) 03-05-2012, 01:43 PM
Replies: 3
Views: 5,141
Posted By renesh
You should use standlone NCBI Blast tool for...

You should use standlone NCBI Blast tool for finding the coverage of assembly.
Forum: Bioinformatics 09-10-2011, 09:16 AM
Replies: 1
Views: 1,433
Posted By renesh
Folding RNA (urgent)

Hi......I want to predict the structure of miRNA precursor. I tried viennafold package and mfold packages. I am able to predict the structure with my sequences. But I want to predict the structure in...
Showing results 1 to 9 of 9

 


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