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Forum: Bioinformatics 08-11-2015, 07:42 AM
Replies: 0
Views: 528
Posted By mcrusch
GRCh38 no alt using latest patch

We would like to take advantage of the latest patch of GRCh38, but we also want to use the no alt analysis set. From the FTP links on the GRC site, I can only see the "analysis_set" versions for the...
Forum: Bioinformatics 04-28-2015, 08:28 AM
Replies: 0
Views: 522
Posted By mcrusch
Database schema/data model for sequencing methods

Does anybody know about a database, database schema, data model, etc., for modeling information about next gen sequencing methods or experiments?

We do most of our tracking at the level of a...
Forum: Academic/Non-Profit Jobs 05-09-2013, 10:46 AM
Replies: 0
Views: 737
Posted By mcrusch
Sr Software Engineer positions at St Jude

There are two openings for Senior Software Engineers in the Computational Biology Department of St Jude Children's Research Hospital. The department has a proven track record in groundbreaking...
Forum: Bioinformatics 03-15-2012, 09:50 AM
Replies: 4
Views: 1,692
Posted By mcrusch
I had never even run across Tablet. It looks...

I had never even run across Tablet. It looks quite slick, and I see the two paired-end modes. This is great, thanks!
Forum: Bioinformatics 03-14-2012, 12:24 PM
Replies: 4
Views: 1,692
Posted By mcrusch
BAM viewer that displays by insert

Is there a BAM viewer that allows you to display by insert rather than only by read?

Most BAM visualization tools treat each read separately. However, for paired-end data, it can be helpful to...
Forum: Bioinformatics 10-17-2011, 09:39 AM
Replies: 20
Views: 8,922
Posted By mcrusch
Thank you for this change! Is this patch...

Thank you for this change!

Is this patch released yet, or is there a more specific ETA?
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