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  • ECO
    --Site Admin--
    • Oct 2007
    • 1360

    ABI Expands SOLiD Software Community

    Looks like ABI has begun releasing more tools to their user community...see their new site http://solidsoftwaretools.com/ (I really like the color scheme they chose for the site.. )

    A variety of assembly and mapping tools are available...as far as I can tell they are parts of the pipeline already present on the instrument..."corona" and "matoGff" are built in tools that do the automated secondary analysis. Now they are provided as standalones with fairly detailed documentation...which is always helpful.

    Also there are a couple of sample data sets offered, frag and mate pair sets of DH10B.

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  • GATTACAT
    Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
    by GATTACAT
    Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
    07-01-2026, 11:43 AM
  • SEQadmin2
    Nine Things a Sample Prep Scientist Thinks About Before Sequencing
    by SEQadmin2


    I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

    Here are nine questions we think about, in roughly the order they matter, before...
    06-18-2026, 07:11 AM

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