TopHat - wig file not compatible with UCSC?

[dukevn]

Hi all,

I tried TopHat (http://tophat.cbcb.umd.edu/) and got outputs including both bed and wig files. With custom track on UCSC, junctions.bed was loaded without any problem. But when I tried with coverage.wig file, I always got error:

Error File 'coverage.wig' - Error line 2003840 of custom track: chromEnd less than 1 (0)

Anybody sees this error before?

Thanks,

D.

[HTS]

Yes, I got the same error and have reported the bug to Cole Trapnell. Try to look for the line says "chrM 0 0 0" and delete it, and it should solve the problem (at least it works in my case).

-- Leo

[Kasycas]

same problem

Hi,

I have the same problem. Did Leo's solution work for you dukevn?

Thanks!

[dukevn]

Hi,

I have the same problem. Did Leo's solution work for you dukevn?

Thanks!

Yes, it worked for me as well. Thanks for your temp solution Leo.

D.