Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • RezaFalsafi
    Junior Member
    • Apr 2013
    • 8

    #1

    Quantification method-iLlumina libraries

    Hello, I prepare libraries for RNAseq for a GAIIx we have. I use both High sensitivity DNA chip and KAPA library quant kit to quantify my samples. However, I have noticed sometimes for some samples the concentrations are way off as when I put even 4 pm i do nnot get anything and it seems over clustered(too many clusters/mm2)
    any suggestion or any kits/method I could reliably use so it does not have the limitation of not quantifying very highly concentrated samples?

    Thanks a lot in advance
  • SS00
    PhD Student
    • Jun 2012
    • 33

    #2
    For high concentrated samples (e.g. with >5cycles PCR) I tend to nanodrop the sample first to get a rough reading of the concentration and dilute down to a range I have confidence that qPCR can quantify, for me that is 30nM (by Nanodrop).

    You might also try swapping out your standards from KAPA standards to one that is more similar to your sample. E.g. if you are qPCRing RNAseq libraries, choose a sample you have gotten good concentrations from at a given loading concentration and use that to prepare your standards for qPCR.

    Comment

    • RezaFalsafi
      Junior Member
      • Apr 2013
      • 8

      #3
      Thanks a lot for the help will do so next time.

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        Beyond CRISPR/Cas9: Understand, Choose, and Use the Right Genome Editing Tool
        by SEQadmin2



        CRISPR/Cas9 sparked the gene editing revolution for both research and therapeutics.1 But this system still showed severe issues that limited its applications. The most prominent were the heavy reliance on PAM sequences, delivery limitations, double-stranded breaks that prompt unintended edits and cell death, and editing inefficiency (both in targeting and in knock-in reliability).

        Despite this, “CRISPR helped turn genome editing from a specialized technique into
        ...
        07-31-2026, 11:01 AM
      • SEQadmin2
        Proteomic Platforms: How to Choose the Right Analytical Strategy to Improve Detection and Clinical Applications
        by SEQadmin2


        Proteomics platforms are evolving rapidly, with advances in mass spectrometry and affinity-based approaches expanding what researchers can detect and at what scale. As the field moves toward deeper proteome coverage and clinical applications, scientists face an increasingly complex landscape of tools. This article will explore how researchers are navigating these choices to find the right platform for their work.

        The systematic characterization of the human proteome has
        ...
        07-20-2026, 11:48 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 08-13-2026, 12:22 PM
      0 responses
      28 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 08-11-2026, 10:35 AM
      0 responses
      22 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 08-06-2026, 07:41 AM
      0 responses
      37 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 08-03-2026, 10:13 AM
      0 responses
      51 views
      0 reactions
      Last Post SEQadmin2  
      Working...