SOAPsnpZ error : 'std::out_of_range'

ashNZ

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Join Date: May 2013

Posts: 11
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SOAPsnpZ error : 'std::out_of_range'

10-09-2013, 06:17 AM

Gday all,

I am attempting to use SOAPsnpZ to call SNPs from SOLiD data that I aligned using SOAP2. After conducting the alignment I 'sorted' the output .txt file and when I try to feed it into the SNP caller I am getting this error message pretty much straight after program execution:

Reading Chromosome and dbSNP information Done.
terminate called after throwing an instance of 'std:ut_of_range'
what(): basic string::substr

Can anyone help me to solve this problem? It would be greatly appreciated! This is my first time using SOAP so I am still very much a beginner.

Cheers
Ash

Last edited by ashNZ; 10-09-2013, 06:21 AM.
Tags: soap, soap assembly sequencing, soap2, soapaligner, soapsnp
IBseq

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Join Date: Jul 2012

Posts: 56
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#2

11-30-2017, 10:14 AM

hi
did you get an answer?

ib

Originally posted by ashNZ View Post

Gday all,

I am attempting to use SOAPsnpZ to call SNPs from SOLiD data that I aligned using SOAP2. After conducting the alignment I 'sorted' the output .txt file and when I try to feed it into the SNP caller I am getting this error message pretty much straight after program execution:

Reading Chromosome and dbSNP information Done.
terminate called after throwing an instance of 'std:ut_of_range'
what(): basic string::substr

Can anyone help me to solve this problem? It would be greatly appreciated! This is my first time using SOAP so I am still very much a beginner.

Cheers
Ash
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SOAPsnpZ error : 'std::out_of_range'

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