toxonomic classification and abundance research in metagenomic dataset
I have a metagenomic dataset of Ilunima WGS, and I want to do toxonomic classification and abundance research ,
there are certainly a lot of ribosomal reads in my data, my question is whether it is possible to use these in the research?
if this is not possible, in order to finish the task,
which database should I use to do alignment, file from ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ or ftp://ftp.ncbi.nlm.nih.gov/genomes/ ?
thank you for your help!
there are certainly a lot of ribosomal reads in my data, my question is whether it is possible to use these in the research?
if this is not possible, in order to finish the task,
which database should I use to do alignment, file from ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ or ftp://ftp.ncbi.nlm.nih.gov/genomes/ ?
thank you for your help!