That's my only guess. This works on both Ubuntu and OS X.
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it is a very simple problem, as you can see in the below example:
the protein details are listed in the first row (columns from A to I) while coverage values are listed in the second row (coulmns B, C, D, E)- how to move these coverage values from the second row to the first row to columns J, K, L, M
NC_022544.1 RefSeq gene 2096621 2097676 0 - 0 ID=gene2037;Name=cbiG;Dbxref=GeneID:17157414;gbkey=Gene;gene=cbiG;locus_tag=STMDT2_20011
2505 1056 1056 1Comment
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Yeah, the awk command I posted works on both Linux and OS X. Presumably you're moving files between systems with different line endings or something like that. If so, my script could easily be converted to python and the input opened with "rU" to avoid that issue (or you could just change RS appropriately).Comment
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I transfered the reference genome file to other folder and solved the problemComment
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