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Old 12-11-2013, 01:02 AM   #5
ilyaso
Junior Member
 
Location: Israel

Join Date: Dec 2013
Posts: 2
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Hi all,
I have a question to LSC users. I have a 5x coverage with PacBio reads of ~2 Gb genome and something like 100x coverage with Illumina reads that I want to try to use for correction of the long reads.
The problem is that the pacbio data is more than 2^32 bits and thus bowtie\blasr indexing does not work for it and thus I can't run alignment of the short reads. I am wondering if anyone knows how to overcome it
Thanks a lot!
Ilya
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