View Single Post
Old 03-25-2014, 07:49 AM   #19
Thias
Member
 
Location: Münster, Germany

Join Date: Mar 2013
Posts: 42
Default

Yes, I set the threads=8 option and also a memory limit of 32g for bbmap.

However I realised that I initially wrote the job script in a way that the scheduler could assign random distributed cores to the job. When I limited that only to cores of one particular node, then everything runs smoothly. So no problem with bbmap, only with me using the batch system correctly .

Last edited by Thias; 03-25-2014 at 08:12 AM.
Thias is offline   Reply With Quote