View Single Post
Old 07-10-2014, 03:37 AM   #7
uloeber
Member
 
Location: Germany

Join Date: Mar 2013
Posts: 31
Default

Hi Brian,
I used the following command for normalization of my oversequenced genome:
Code:
 ./bbnorm.sh in=species_L004_paired.fastq out=normalized_L004_80x.fastq target=80
Maybe that is the same question as mentioned before, but I expect that errors represented by low frequent kmers have more weight after the normalization. Is it like that?
By the way, even after the first run of you tool my assembly statistics increase. You did a great job! Thank you!
By the way, did I missed to give the pairing argument?
uloeber is offline   Reply With Quote