Unconfigured Ad

Collapse
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • jflowers002
    Junior Member
    • Jan 2013
    • 6
    #1

    Orthomcl problems

    I am trying to run Orthomcl, but when I try the first step to load the blast results into mysql (orthomclLoadBlast), I get the following error:

    DBD::mysql::st execute failed: Table 'orthomcl.similarsequences' doesn't exist.

    I am not sure what to do.

    Thanks!
    Tags: orthomcl, orthomclloadblast
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142
    #2
    Did you follow the directions in the user guide to install/configure program/database etc?

    The error above seems to indicate that you either did not create that table or called it something else.

    Comment

    • jflowers002
      Junior Member
      • Jan 2013
      • 6
      #3
      Solved

      Thanks for the reply. I forgot to re-run the InstallSchema script after having to uninstall and then re-install Mysql to deal with issues with that installation.

      Thanks again!

      Comment

      • impessa
        Junior Member
        • Jul 2014
        • 1
        #4
        Hi
        Somebody can said me how to process the output file of OrthoMCL to draw the venn diagrams ?

        Thanks !!

        Comment

        Previous template Next

        Latest Articles

        Collapse
        • GATTACAT
          Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
          by GATTACAT
          Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
          07-01-2026, 11:43 AM
        • SEQadmin2
          Nine Things a Sample Prep Scientist Thinks About Before Sequencing
          by SEQadmin2


          I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

          Here are nine questions we think about, in roughly the order they matter, before...
          06-18-2026, 07:11 AM
        View All

        ad_right_rmr

        Collapse

        News

        Collapse
        Topics Statistics Last Post
        High-Resolution Sequencing Exposes Hidden Toxoplasma Diversity by SEQadmin2
        Started by SEQadmin2, 07-02-2026, 11:08 AM
        0 responses
        22 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        07-02-2026, 11:08 AM  
        New AI Model Captures Long-Range Genomic Signals to Improve RNA Splice Site Prediction by SEQadmin2
        Started by SEQadmin2, 06-30-2026, 05:37 AM
        0 responses
        23 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        06-30-2026, 05:37 AM  
        Large-Scale Protein Screen Uncovers Hidden Regulators of Alternative Polyadenylation by SEQadmin2
        Started by SEQadmin2, 06-26-2026, 11:10 AM
        0 responses
        22 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        06-26-2026, 11:10 AM  
        Whole-Genome Sequencing Traces Faroe Islands Ancestry to a North Atlantic Founder Population by SEQadmin2
        Started by SEQadmin2, 06-17-2026, 06:09 AM
        0 responses
        55 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        06-17-2026, 06:09 AM  
        View All
        Working...