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Old 10-12-2014, 08:33 PM   #5
Location: New Delhi

Join Date: Sep 2014
Posts: 30

When I use the command in bbtools package I am getting the following error::
java -ea -Xmx200m -cp /home/himanshu/Downloads/me2/bbmap/current/ jgi.ReformatReads -in=reads.fna qfin=reads.qual out=reads.fasta
Executing jgi.ReformatReads [-in=reads.fna, qfin=reads.qual, out=reads.fasta]

Input is being processed as unpaired
Exception in thread "Thread-1" java.lang.AssertionError
at stream.FastaQualReadInputStream3.makeRead(
at stream.FastaQualReadInputStream3.toReadList(
at stream.FastaQualReadInputStream3.toReads(
at stream.FastaQualReadInputStream3.fillBuffer(
at stream.FastaQualReadInputStream3.hasMore(
at stream.ConcurrentGenericReadInputStream$ReadThread.readLists(
at stream.ConcurrentGenericReadInputStream$

Please help me
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