RNA-Seq & SNP/INDEL Analysis of Illumina GA Reads

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gavin.oliver

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Join Date: Jan 2010

Posts: 110
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#1

RNA-Seq & SNP/INDEL Analysis of Illumina GA Reads

03-10-2010, 03:13 AM

Hi all,

Just wondering if I could get some quick software recommendations for said applications?

(From alignment to visualisation / commercial or non-commercial)

Thanks,

Gavin
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bioinfosm

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Join Date: Jan 2008

Posts: 483
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#2

03-10-2010, 10:40 AM

tophat/cufflinks for rna-seq and maq or bwa for snp/indel

this post would be helpful for you: http://seqanswers.com/forums/showthread.php?t=43

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bioinfosm
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