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Hello all,
This is my first post and I'm new to bioinformatics
I am trying to add RG tags and sample ID to a list of sorted bam files, i have tried all the above mentioned scripts. i was able to add the RG tags to all my files, later calling with freebayes for SNP, my ouput vcf file has only the header part
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT L6-6
the rest is empty. could some one help me with this, all i need is after i call for SNP, i would like to have all the genotypes labeled with the specific sample IDs.
Thank you all
This is my first post and I'm new to bioinformatics
I am trying to add RG tags and sample ID to a list of sorted bam files, i have tried all the above mentioned scripts. i was able to add the RG tags to all my files, later calling with freebayes for SNP, my ouput vcf file has only the header part
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT L6-6
the rest is empty. could some one help me with this, all i need is after i call for SNP, i would like to have all the genotypes labeled with the specific sample IDs.
Thank you all
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