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Old 02-26-2015, 12:11 PM   #13
Location: USA

Join Date: Sep 2014
Posts: 18

Hi Brian,

Sorry for the lack of information. When I said "without success": the program stop and the prompt appear (see below - last 9 lines) . Again only when I used 4 ref files. I used the same commands listed in the previous post (with and without the ambig2=split flag) and used the flags outu1 and outu2 (as you suggested) with the same outcome. Maybe a JAVA conflict?

HTML Code:
Loaded Reference:       0.010 seconds.
Loading index for chunk 1-0, build 1
Generated Index:        0.039 seconds.
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 1
        at align2.BBIndex.analyzeIndex(
        at align2.BBMap.loadIndex(
        at align2.BBMap.main(
        at align2.BBSplitter.main(

Last edited by vingomez; 02-26-2015 at 12:22 PM.
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