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  • kaps
    Member
    • Jan 2015
    • 71

    #1

    plant genomes at NCBI

    Dear all,
    There are genome sequences for various plants at ftp://ftp.ncbi.nlm.nih.gov/genomes/PLANTS/ which are of interest to me. However I cannot additional information about these sequences. I am more interested in supporting info about Vigna_unguiculata sequences.
    Your help is welcome.
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    Looks like there is only BAC end clones for Vigna: http://vigun.comparative-legumes.org/.

    Comment

    • kaps
      Member
      • Jan 2015
      • 71

      #3
      I have looked at the link suggested and it appears the cowpea DNA used for BAC library preparation came from a back cross with a virus resistant variety? If that is the case then I think it would suit my purpose since I want to do a customised blast of contigs (from whole transcriptome sequencing) using BAC clones as the database.

      Is the Vigna_unguiculata.BES.gz file at ftp site referring to BAC end clones?

      Comment

      • GenoMax
        Senior Member
        • Feb 2008
        • 7142

        #4
        They are BAC clone end sequences.

        Comment

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