Unconfigured Ad

Collapse
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • kaps
    Member
    • Jan 2015
    • 71
    #1

    plant genomes at NCBI

    Dear all,
    There are genome sequences for various plants at ftp://ftp.ncbi.nlm.nih.gov/genomes/PLANTS/ which are of interest to me. However I cannot additional information about these sequences. I am more interested in supporting info about Vigna_unguiculata sequences.
    Your help is welcome.
    Tags: ncbi, plant genomes, plant_sequence data
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142
    #2
    Looks like there is only BAC end clones for Vigna: http://vigun.comparative-legumes.org/.

    Comment

    • kaps
      Member
      • Jan 2015
      • 71
      #3
      I have looked at the link suggested and it appears the cowpea DNA used for BAC library preparation came from a back cross with a virus resistant variety? If that is the case then I think it would suit my purpose since I want to do a customised blast of contigs (from whole transcriptome sequencing) using BAC clones as the database.

      Is the Vigna_unguiculata.BES.gz file at ftp site referring to BAC end clones?

      Comment

      • GenoMax
        Senior Member
        • Feb 2008
        • 7142
        #4
        They are BAC clone end sequences.

        Comment

        Previous template Next

        Latest Articles

        Collapse
        • GATTACAT
          Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
          by GATTACAT
          Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
          07-01-2026, 11:43 AM
        • SEQadmin2
          Nine Things a Sample Prep Scientist Thinks About Before Sequencing
          by SEQadmin2


          I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

          Here are nine questions we think about, in roughly the order they matter, before...
          06-18-2026, 07:11 AM
        View All

        ad_right_rmr

        Collapse

        News

        Collapse
        Topics Statistics Last Post
        High-Resolution Sequencing Exposes Hidden Toxoplasma Diversity by SEQadmin2
        Started by SEQadmin2, Yesterday, 11:08 AM
        0 responses
        7 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        Yesterday, 11:08 AM  
        New AI Model Captures Long-Range Genomic Signals to Improve RNA Splice Site Prediction by SEQadmin2
        Started by SEQadmin2, 06-30-2026, 05:37 AM
        0 responses
        11 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        06-30-2026, 05:37 AM  
        Large-Scale Protein Screen Uncovers Hidden Regulators of Alternative Polyadenylation by SEQadmin2
        Started by SEQadmin2, 06-26-2026, 11:10 AM
        0 responses
        19 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        06-26-2026, 11:10 AM  
        Whole-Genome Sequencing Traces Faroe Islands Ancestry to a North Atlantic Founder Population by SEQadmin2
        Started by SEQadmin2, 06-17-2026, 06:09 AM
        0 responses
        53 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        06-17-2026, 06:09 AM  
        View All
        Working...