Obtain a bed file with the name of gene

[biomitty]

Hi,

I have a gene of interest. How can I obtain the bed file for the particular gene. I tried it on UCSC. Is there an alternate way? Is there an efficient way to automate this process if I have many genes of interest. If this question has been asked before, kindly point me to that direction.

Thanks

[dpryan]

You could also use biomart, which provides a number of programmatic interfaces. BTW, UCSC can also be accessed via SQL, which is often convenient in cases like this.

[GenoMax]

@biomitty: Did you try table browser for this or some other way?

[Caroline336]

Hi, for bioinformatics related questions. I think it's a good idea to ask those companies who provide bioinformatics service; Ie. Creative BioMart. Good luck!