multi-sample 16S Illumina metagenome analysis in Galaxy

[ewhameta2015]

Dear Experts !!

I want to use Galaxy to analyze Illumina 16S metagenome data, which is ~200 fastq files, paired-end reads (meaning 100 samples), in 2 groups.

Basically, I'd like to identify microorganims that are differentially abindant (?) in one of the 2 groups (healthy vs disease).

Since I am not good at all with Unix, I want to use galaxy on the web.

I can not find any recent Galaxy example/history/work-flow that starts from importing multi samples to the final analysis.
I am very new to NGS in general.
Would appreciate your advice.

[maubp]

Try searching for metagenetics since this is not metagenomics (you are looking at many versions of one gene, not many different genomes).